User:Hashbrownbish/sandbox/Reflectin

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Reflectin are a protein family made up of aromatic (common) and sulfur-containing amino acids, expressed exclusively in cephalopods.[1] Cephalopods are marine animals with distinguishing characteristics such as a mantle (a protective casing of muscle surrounding internal organs), tentacles and/or legs, and motility through propulsion. Well-known types of cephalopods include squid, octopuses, and cuttlefish. Reflectin contributes to the color and iridescent changing properties of these marine organisms.[2] [3]

The reflectin protein is responsible for dynamic pigmentation and iridescence in organisms. This process is “dynamic” due to its reversible properties, allowing reflectin to change an organism’s appearance in response to external factors such as needing to camouflage or send warning signals.

Reflectin proteins are likely distributed in the outer layer of cells called "sheath cells" that surround an organism’s pigment cells also known as chromatocyte.[4] Specific sequences of reflectin ables cephalopods to communicate and camouflage by adjusting color and reflectivity.[5]

Origin[edit]

Reflectin is presumed to have originated from a type of transposon (nicknamed jumping genes), which is a DNA sequence that can change positions within genetic material by encoding an enzyme. The encoded enzyme detaches transposon from one location in a genome and ligates (binds) it to another. "Jumps" of transposon can create or reverse mutations that alter a cell's genetic identity which can result in new characteristics. This process can be thought of as a “cut and paste” mechanism. Transposons’ ability to adapt in a genome and quickly shift its identity is a property that closely resemble the behavior of reflectin.

An additional ancestor could be symbiotic Vibrio fischeri (also called Aliivibrio fischeri) which is a bioluminescent (produces and emits light) bacterium often found in symbiotic relationships. As reflectin and Vibrio Fischeri share similar functions such as producing an iridescent appearance in organisms, it is also thought that, just like Vibrio Ficheri, Reflectin is symbiotic and is used by cephalopods to interact with their environment. [6][7]

Structure[edit]

Reflectin is a disordered protein made up of conserved amino acid sequences. Each sequence includes a combination of standard and sulphur-containing amino acids. Although the basic structure can be deduced, the exact molecular structure is yet to be determined. Light interacting properties of reflectin can be attributed to its ordered hierarchical structure and hydrogen bonding. [8][9][10]

Reflectin In Membranes[edit]

Reflectin make up the majority of Bragg reflectors which are formed by invaginations of the cell membrane. Bragg reflectors are responsible for reflecting color in a type of skin cell called iridocyte. Reflectors are composed of periodically stacked lamellae which are thin layers of tissue bound to a membrane. The color and brightness of light reflected by many species is determined by the thickness, spacing, and refractive index (how fast light can travel through the membrane) of the Bragg lamellae.[11] A change in membrane thickness triggers an outflow of water from the Bragg lamellae, essentially dehydrating it, increasing their refractive index and decreasing thickness and spacing. This results in an increase in reflectance from the Bragg lamellae, and a change in color of the reflected light. This change additionally allows initially transparent cells to increase in brightness [12]

Mechanisms[edit]

Reflectin is able to receive information from signals for a continuous process to fine-tune the osmotic pressure of sub-cellular structures of cephlapods. This ongoing process is used to regulate photonic behavior, or in other words, control how an organism changes color. The components of reflectin carry a very strong positive charge. Nerve signals are sent to iridophore cells (also called chromatophores) which are pigment-containing cells that add a negative charge to reflectin. With the charges balanced, the protein folds up to expose a sticky surface, causing reflecting molecules to clump together. This process repeats until enough reflectin proteins have accumulated to change the fluid pressure of the membrane of the cell walls. The thickness of the membrane reduces as water escapes, a process that changes the wavelength of light reflected.[13] By adapting an organisms membrane to reflect different wavelengths, reflection allows cephlapods to shift from different colors of red, yellow, green, and blue as well as adjust the brightness of the projected color. [14][15][16][17]

Further Discoveries[edit]

  • Researchers at the University of California in Santa Barbara (UCSB) may have implications for molecular engineering based on the mechanisms similar to transformations controlled by reflectin. Discoveries about reflectin may even point the way towards treatments for Alzheimer’s disease. Processes used by reflectin are similar to those seen when proteins assemble in the brain during the progress of protein-related diseases like Alzheimer’s and Parkinson’s. Understanding how brain-damaging pathology might be reversed.
  • Researchers think that reversible mechanisms used by reflectin protein may be replicated to develop dynamic living human cells and tissues. These findings could be applied to the development of biophotonic tools used in material science and bioengineering[19] Optical engineering of human cells
  • Based on reflectin's function to camouflage cephalopods, researchers believe it is possible to create a material used for the growth of human neural and progenitor cells. [20] Using reflectin as a material for neural stem cell growth

References[edit]

  1. ^ DeMartini, Daniel G.; Izumi, Michi; Weaver, Aaron T.; Pandolfi, Erica; Morse, Daniel E. (2015-06-12). "Structures, Organization, and Function of Reflectin Proteins in Dynamically Tunable Reflective Cells". Journal of Biological Chemistry. 290 (24): 15238–15249. doi:10.1074/jbc.M115.638254. ISSN 0021-9258. PMID 25918159.{{cite journal}}: CS1 maint: unflagged free DOI (link)
  2. ^ "Get to Know The Four Types of Cephalopods". Birch Aquarium Blog. 2018-10-11. Retrieved 2020-11-16.
  3. ^ "Structural Coloration". navigation-x. Retrieved 2020-11-17.
  4. ^ Song, Junyi; Levenson, Robert; Santos, Jerome; Velazquez, Lourdes; Zhang, Fan; Fygenson, Deborah; Wu, Wenjian; Morse, Daniel E. (2020-03-17). "Reflectin Proteins Bind and Reorganize Synthetic Phospholipid Vesicles". Langmuir. 36 (10): 2673–2682. doi:10.1021/acs.langmuir.9b03632. ISSN 0743-7463.
  5. ^ Kim, Meeri (2017-08-21). "New research on reflectin proteins sheds light on cephalopods' camouflage". Scilight. 2017 (9): 090008. doi:10.1063/1.5000813.
  6. ^ Guan, Zhe; Cai, Tiantian; Liu, Zhongmin; Dou, Yunfeng; Hu, Xuesong; Zhang, Peng; Sun, Xin; Li, Hongwei; Kuang, Yao; Zhai, Qiran; Ruan, Hao (2017-09-25). "Origin of the Reflectin Gene and Hierarchical Assembly of Its Protein". Current Biology. 27 (18): 2833–2842.e6. doi:10.1016/j.cub.2017.07.061. ISSN 0960-9822. PMID 28889973.
  7. ^ "Research group discovers the origin of octopuses' instant modulation of body coloration". phys.org. Retrieved 2020-11-16.
  8. ^ "NSF Award Search: Award#1856055 - Molecular basis of tunable iridescence and excellent proton conductance of the reflectin assembly". www.nsf.gov. Retrieved 2020-11-16.
  9. ^ Kramer, Ryan M.; Crookes-Goodson, Wendy J.; Naik, Rajesh R. (2007-07). "The self-organizing properties of squid reflectin protein". Nature Materials. 6 (7): 533–538. doi:10.1038/nmat1930. ISSN 1476-4660. {{cite journal}}: Check date values in: |date= (help)
  10. ^ "Structure of Reflectin Protein Probed by Solid-State Nuclear Magnetic Resonance | Argonne National Laboratory". www.anl.gov. Retrieved 2020-11-16.
  11. ^ Ghoshal, Amitabh; DeMartini, Daniel G.; Eck, Elizabeth; Morse, Daniel E. (2013-08-06). "Optical parameters of the tunable Bragg reflectors in squid". Journal of the Royal Society Interface. 10 (85). doi:10.1098/rsif.2013.0386. ISSN 1742-5689. PMC 4043173. PMID 23740489.
  12. ^ "Structure of Reflectin Protein Probed by Solid-State Nuclear Magnetic Resonance | Argonne National Laboratory". www.anl.gov. Retrieved 2020-11-17.
  13. ^ Song, Junyi; Levenson, Robert; Santos, Jerome; Velazquez, Lourdes; Zhang, Fan; Fygenson, Deborah; Wu, Wenjian; Morse, Daniel E. (2020-03-17). "Reflectin Proteins Bind and Reorganize Synthetic Phospholipid Vesicles". Langmuir. 36 (10): 2673–2682. doi:10.1021/acs.langmuir.9b03632. ISSN 0743-7463.
  14. ^ Phan, Long; Kautz, Rylan; Arulmoli, Janahan; Kim, Iris H.; Le, Dai Trang T.; Shenk, Michael A.; Pathak, Medha M.; Flanagan, Lisa A.; Tombola, Francesco; Gorodetsky, Alon A. (2016-01-13). "Reflectin as a Material for Neural Stem Cell Growth". ACS Applied Materials & Interfaces. 8 (1): 278–284. doi:10.1021/acsami.5b08717. ISSN 1944-8244. PMC 4721522. PMID 26703760.{{cite journal}}: CS1 maint: PMC format (link)
  15. ^ Qin, Guokui; Dennis, Patrick B.; Zhang, Yuji; Hu, Xiao; Bressner, Jason E.; Sun, Zhongyuan; Crookes‐Goodson, Wendy J.; Naik, Rajesh R.; Omenetto, Fiorenzo G.; Kaplan, David L. (2013). "Recombinant reflectin-based optical materials". Journal of Polymer Science Part B: Polymer Physics. 51 (4): 254–264. doi:10.1002/polb.23204. ISSN 1099-0488.
  16. ^ Naughton, Kyle L.; Phan, Long; Leung, Erica M.; Kautz, Rylan; Lin, Qiyin; Van Dyke, Yegor; Marmiroli, Benedetta; Sartori, Barbara; Arvai, Andy; Li, Sheng; Pique, Michael E. (2016-07-25). "Self-Assembly of the Cephalopod Protein Reflectin". Advanced Materials. 28 (38): 8405–8412. doi:10.1002/adma.201601666. ISSN 0935-9648.
  17. ^ Levenson, Robert; Bracken, Colton; Sharma, Cristian; Santos, Jerome; Arata, Claire; Malady, Brandon; Morse, Daniel E. (2019-11-08). "Calibration between trigger and color: Neutralization of a genetically encoded coulombic switch and dynamic arrest precisely tune reflectin assembly". Journal of Biological Chemistry. 294 (45): 16804–16815. doi:10.1074/jbc.RA119.010339. ISSN 0021-9258. PMID 31558609.{{cite journal}}: CS1 maint: unflagged free DOI (link)
  18. ^ "Synthetic Biology with Reflectin: Engineering a New Kind of Biomolecular Machine | Institute for Collaborative Biotechnology (ICB) | UCSB, MIT and Caltech". www.icb.ucsb.edu. Retrieved 2020-11-17.
  19. ^ Nathan, Stuart (2019-11-18). "Squid discovery could revolutionise molecular engineering". The Engineer. Retrieved 2020-11-17.
  20. ^ Phan, Long; Kautz, Rylan; Arulmoli, Janahan; Kim, Iris H.; Le, Dai Trang T.; Shenk, Michael A.; Pathak, Medha M.; Flanagan, Lisa A.; Tombola, Francesco; Gorodetsky, Alon A. (2016-01-13). "Reflectin as a Material for Neural Stem Cell Growth". ACS Applied Materials & Interfaces. 8 (1): 278–284. doi:10.1021/acsami.5b08717. ISSN 1944-8244. PMC 4721522. PMID 26703760.{{cite journal}}: CS1 maint: PMC format (link)

External links[edit]

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