User:Egonw/Acks

Some things are hard to track, but I want to track them nevertheless. This is just for myself, to collect journal articles which acknowledge some of my contributions to research.

• 2023
  • https://doi.org/10.1002/cpz1.682: ""name": "Egon Willighagen", "identifier": "https://orcid.org/0000-0001-7542-0286"," (well, it feels like acknowledgement)
  • https://doi.org/10.1021/acs.est.3c01735: "The authors acknowledge Jennifer Yang (CAS Registry numbers) and Paul Thiessen and Evan Bolton (PubChem, WIPO patent numbers) for providing the data and/or tips to retrieve the data used in Figure 1 and Egon Willighagen (Maastricht University, Maastricht, The Netherlands) and Jeremy Frey (University of Southampton, Southampton, U.K.) for helping stimulate these discussions."
  • https://doi.org/10.1016/j.cbpa.2023.102288: "The authors thank all Dagstuhl 2022 participants for contributing to vivid discussions on the above topics that served as input for this perspective." (I participated)
• 2022
  • https://doi.org/10.3389/fmolb.2022.1028334: "The authors thank Egon Willighagen for the help with fully defined SMILES upload on Wikidata."
  • https://peerj.com/articles/13712/: "I thank the numerous Wikidata contributors (some known only by their usernames) who have helped me learn the ropes and navigate the active and opinionated Wikidata community. Among these contributors are Christian Ferrer, Siobhan Leachman, Andy Mabbett, Daniel Mietchen, Succu, Andra Waagmeester, and Egon Willighagen."
  • https://doi.org/10.1093/exposome/osab006: "We also gratefully acknowledge discussions with Egon Willighagen and the editorial team at the Journal of Cheminformatics (surrounding the lead-up article to this article)"
  • https://doi.org/10.3233/SW-210444: "We thank the Wikidata community, Egon Willighagen (Maastricht University, Netherlands), Toby Hudson (University of Sydney, Australia), Adam Shorland (Wikimedia Deutschland, Germany), and Mahir Morshed (University of Illinois at Urbana-Champaign, United States of America) for useful comments and discussions about the topic of this research paper."
  • https://doi.org/10.1098/rsos.211032: "The authors gratefully thank the following for valuable comments on earlier drafts of this article: three reviewers for Royal Society Open Science, Bernhard Wieser (via email), Benedikt Fecher (via email), Daniel Lakens (via Hypothesis), Egon Willighagen (via Hypothesis) and Cameron Neylon (via Twitter)."
  • https://doi.org/10.1055/a-1957-8449: "Image credit: Raquel Grosman, Denise Slenter, Egon Willighagen, Eric Weitz, Finterly Hu, Kristina Hanspers, Sam Drabbe, CC0, via Wikimedia Commons. https://commons.wikimedia.org/wiki/File:WP4742_122056.png. http://creativecommons.org/licenses/by/4.0/."
• 2021
  • https://arxiv.org/pdf/2110.11709.pdf: "The Wikidata and Wikibase community provided a great environment and software whose potential we are still discovering, special thanks to Lydia Pintscher, Adam Shorland, Daniel Mietchen, Egon Willighagen, Finn ˚Arup Nielsen, etc."
  • https://doi.org/10.1186/s13321-021-00520-4: "We gratefully acknowledge discussions with the PubChem team including Ben Shoemaker, Jian (Jeff) Zhang, Paul Thiessen, Tiejun Cheng, Siqian He, Asta Gindulyte, as well as Egon Willighagen, Rajarshi Guha and Matthew Smyllie from the JCheminform Editorial team, plus the entire editorial team for discussions during revision, and many collaborators who have worked on depositions within the NORMAN-SLE."
  • https://doi.org/10.1371/journal.pcbi.1008938: "The authors would also like to thank Dr. Lauren Dupuis, postdoc and teacher at the Department of Bioinformatics and English native speaker, for critical proofreading, Dr. Egon Willighagen, assistant professor at the Department of Bioinformatics and Editor-in-Chief of the Journal of Cheminformatics, for helpful discussions and information around Rules 7 and 10, and Dr. Lars Eijssen, assistant professor at the Department of Bioinformatics and former bachelor thesis coordinator for the biomedical sciences at Maastricht University, for helpful discussions."
  • https://doi.org/10.1038/s41597-021-00962-3: "Special thanks to Drs. Marvin Martens, Egon Willighagen, Chris Evelo, and Thomas Exner for their contribution to AOP-DB sematic mapping and training of T.L."
  • https://doi.org/10.1186/s13326-021-00241-5: "We would further like to thank Dr Paul Schofield and Dr Egon Willighagen for advice concerning an earlier version of the experiment, particularly surrounding precision and error."
• 2020
  • https://doi.org/10.1186/s12911-020-01336-2: "We would like to thank Dr Paul Schofield and Dr Egon Willighagen for helpful conversations surrounding the described experiments."
  • https://doi.org/10.3390/nano10102033: "Members of the U.S. National Cancer Institute (NCI) National Cancer Informatics Program (NCIP) Nanotechnology Working Group including Egon Willighagen (Maastricht University, NanoCommons project), Mark Wiesner, Christine Hendren and Jaleesia Amos (Duke University), Kaiyan Ni (University of Chicago), and the E.U. NanoSafety Cluster Data Management Working Group F are thanked for useful discussions."
• 2019
  • https://doi.org/10.1186/s13321-019-0361-8: "We appreciate help from Egon Willighagen and John Mayfield with the CDK integration and from Felix Bänsch for unbiased release testing."
  • https://doi.org/10.1186/s12859-019-2863-9: "Furthermore, we would like to thank Dr. Egon Willighagen for his helpful suggestions regarding WikiPathways data."
• 2018
  • https://doi.org/10.3390/metabo8010016: "We thank Egon Willighagen for his help in explaining the structure of WikiPathways and in providing tables that facilitated integration with RaMP."
• 2017
  • https://doi.org/10.4233/uuid:9e9fa82e-06c1-4d0d-9e20-5620259a6c65: "Below, in random order, are the people we spoke to or who made a valuable contribution to the completion of this document, with apologies to any other people we may have omitted to mention. Jan van den Biesen Egon Willighagen Dirk Helbing Ron Dekker Barend Mons Erik van de Linde Lily Knibbeler Hubert Krekels Marjolein Nieboer [...]"
• 2016
  • https://doi.org/10.12688/f1000research.8013.1: "SE gratefully acknowledges discussions with Dr. Priscilla L. Yang, Dr. Warren G. Lewis, Dr. Egon Willighagen, Dr. Rajarshi Guha, Dr. Robert Davey, Dr. Wei Zheng and Dr. Rachelle J. Bienstock while Dr. Christopher D. Southan provided assistance patent searching."
  • https://doi.org/10.1021/acscentsci.6b00086: "Miscellaneous project inputs were gratefully received from William Jackson (Creative Chemistry), Egon Willighagen (Maastricht University), Martine Keenan (Epichem), Darren Dressen (Los Altos High School), Robert Snell (The University of Cambridge, now Charterhouse School) and Joie Garfunkel (Merck)."
  • https://doi.org/10.1039/C5NR08944A: "Egon Willighagen (Maastricht University, eNanoMapper project), Nina Jeliazkova (IdeaConsult Ltd, eNanoMapper project), Sharon Gaheen (Leidos Biomedical Research Inc.), Sharon Ku (Drexel University), Martin J. Fritts (Nanotechnology Characterization Laboratory, SAIC-Fredrick, Inc., NCI at Fredrick), the U.S. National Cancer Institute (NCI) National Cancer Informatics Program (NCIP) Nanotechnology Working Group and the E.U. NanoSafety Cluster Databases Working Group are thanked for useful discussions."
  • https://doi.org/10.1186/s13321-016-0160-4: "Special thanks go to Egon Willighagen and Michael “Miguel” Howard for carrying the torch of project director prior to my engagement in 2006, Ángel Herráez, who has been instrumental in developing Jmol teaching and documentation materials, Zhou Renjian, for his work on Java-to-JavaScript code that has allowed Jmol to be produced simultaneously in Java and JavaScript, and Nicolas Vervelle, who introduced the first primitive SMILES matcher into Jmol."
  • https://doi.org/10.26481/dis.20160120lr: "In het bijzonder wil ik Dr. Egon Willighagen en Prof. dr. Chris Evelo bedanken dat zij mij de mogelijkheid hebben gegeven om mijn promotietraject in een relatief kort tijdbestek succesvol af te ronden."
• 2015
  • https://doi.org/10.17863/CAM.15987: "I owe a great deal of thanks to Egon Willighagen for meticulously reviewing the deluge of patches, programming advice, and for encouraging me to start a blog"
• 2014
  • https://doi.org/10.1186/1758-2946-6-3: "Additionally we would like to specifically thank Egon Willighagen for his thorough review of CDK additions."
• 2012
  • http://hdl.handle.net/1721.1/76484: "I'd like to thank Greg Landrum, Noel O'Boyle, Geoffrey Hutchinson, Egon Willighagen and the rest of the open-source cheminformatics community, without whom this work would have been much more difficult."
  • https://doi.org/10.1021/ac302048x: "We thank Egon Willighagen and Rajarshi Guha from the CDK project for technical help."
  • https://doi.org/10.1002/jms.3131: "We thank Markus Meringer for access and extensions to MOLGEN-MS/MS, Florian Rasche for his assistance with Sirius, Miguel Rojas-Cherto and Egon Willighagen for answering questions about MEF and Takaaki Nishioka for his assistance with MassBank and permission to use the RMassBank name."
• 2010
  • https://doi.org/10.1186/1471-2105-11-362: "The authors would like to acknowledge the developers of the Bioclipse and the Chemistry Development Kit (CDK) projects, in particular Arvid Berg and Egon Willighagen, and Symyx(R) for allowing distribution of the preprocessed Metabolite data."
  • https://doi.org/10.1186/1471-2105-11-148: "We thank the CDK team (especially Egon Willighagen and Rajarshi Guha) for this cheminformatics library, and Michael Gerlich, Carsten Kuhl and Ralf Tautenhahn for helpful discussions."
  • https://doi.org/10.1107/S0021889810030256: "Several other programmers contributed over the years, most notably Egon Willighagen, Nico Vervelle, René Kanters and especially Michael (Miguel) Howard, who single-handedly made Jmol's rendering engine a marvel of Java programming."
• 2008
  • https://doi.org/10.1515/ci.2008.30.1.30: "My personal thanks to many of my fellow bloggers who keep the conversations entertaining, especially Joerg Wegner, Egon Willighagen, Jean-Claude Bradley, Peter Murray-Rust, and Rich Apodaca."
  • https://europepmc.org/article/med/18428094: "The author wishes to thank the following people: Stephen Bryant and Evan Bolton from the PubChem team, the IUPAC/National Institute of Standards and Technology InChI team (Alan McNaught, Stephen Stein, Stephen Heller, Dmitrii Tchekhovskoi); David Wishart and Nelson Young (Drugbank and HMDB), Nicko Goncharoff (SureChem), Stephen Boyer (IBM), Marc Nicklaus (Chemical Structure Lookup Service), members of the ChemSpider Advisory Group (Egon Willighagen, Sean Ekins, Joerg Wegner and Alex Tropsha specifically), Ann Richard and Marti Wolf (DSSTox), Christoph Steinbeck (NMRShiftDB), Nick Day and Peter Murray-Rust (CrystalEye), Martin Walker, Andrew Yeung and Dirk Beestra (Wikipedia Chemistry)."
• 2007
  • https://doi.org/10.1186/1752-153X-1-3: "I am also grateful to Ginger Taylor (Synaptic Leap), Egon Willighagen (Radboud University, Nijmegen), Jean-Claude Bradley (Drexel University, Philadelphia) and Matt Cockerill (BioMed Central, London) for comments."
  • https://doi.org/10.1002/jcc.20823: "We thank several users for submitting bug reports and example log files for regression testing (for full details, see the file THANKS in the cclib distribution), and Egon Willighagen for a critical reading of the manuscript."
  • https://doi.org/10.1021/ci600473z: "The authors would like to thank to the following individuals for useful discussions and technical support:  David Meyer, Vienna University of Economics and Business Administration; Egon Willighagen, Radboud University Nijmegen; Andy Liaw and Vladimir Svetnik, Merck Research Laboratories at New Jersey; Holger Frölich, Center for Bioinformatics at Tübingen; Željka Gjuranović and Valerije Vrček, Faculty of Pharmacy and Biochemistry, University of Zagreb; Lidija Žele-Starčević, KBC Zagreb; and Ivaylo Elenkov, GSK Research Centre Zagreb."
• 2006
  • https://doi.org/10.1002/bmb.2006.494034042644: "Finally, I want to recognize the work of the Jmol v.10 developers team, Michael Howard, Egon Willighagen, Nicolas Vervelle, Bob Hanson, and others, offered for free to the benefit of the scientific and educational communities, and for including features that allow it to be the relay for Chime across diverse web browsers and operating systems."
  • https://sites.ualberta.ca/~csps/JPPS9_2/Dr_Guangli/538-Ma_Predicting_Caco2_FormattedfinalRev3.pdf: "The authors thank Mr. Egon Willighagen for critical review of the second draft of the manuscript."
  • https://doi.org/10.1016/j.chemolab.2006.02.003: "The authors thank Egon Willighagen and Bülent Üstün (Radboud University Nijmegen, the Netherlands) for fruitful discussions and for providing some of the real-world data sets used in this paper."
• 2004
  • https://www.proquest.com/openview/cbf896fbe92526940130365b12354d20/1: "At the Unilever Center for Molecular Informatics, Cambridge, I would like to thank Gemma Holliday, John Mitchell, Peter Murray-Rust and Egon Willighagen, for taking on the huge task of electronically documenting the catalytic mechanisms in this thesis."
  • https://repository.ubn.ru.nl/handle/2066/60698: "Mijn overige collega-promovendi: Han Witjes, Theo Reijmers, Lammert Kooistra, Jos Hageman, Arjan Simmonetti, Jacco Noordam, Ruifen Huo en de voormalige studenten: Uwe Thissen en Egon Willighagen wil ik bedanken voor de gezellige en gemoedelijke sfeer op de afdeling."